Araujo-Granda, P., Gras A., Ginovart M., Moulton V., 2020. INDISIM-Denitrification, an individual-based model for study the denitrification process. Journal of Industrial Microbiology & Biotechnology, available online 05-Nov-2019. doi:10.1007/s10295-019-02245-8. Download INDISIM-Denitrification Manuscript + Suplementary material. Download Model INDISIM-Denitrification. Modelling Commons.
Araujo Granda Pablo Alejandro, doctoral thesis: Developing an individual-based model to study the bacterial denitrification process, supervised by: Dra. Anna Gras Moreu and Dra. Marta Ginovart Gisbert. Date of defense: February 17th, 2017 in UPC-Barcelona Tech – Campus Castelldefels. Awarded a mark of Excellent Cum Laude. Thesis full document. Slides presentation.
Araujo Granda, P.A., Gras A., Ginovart M, 2016. MbT-Tool: An open-access tool based on Thermodynamic Electron Equivalents Model to obtain microbial-metabolic reactions to be used in biotechnological process. Computational and Structural Biotechnology Journal. Volume 14, pp: 325–332. doi:10.1016/j.csbj.2016.08.001. Accepted manuscript. Supplementary material. MbT-tool.
Araujo Granda, P.A., Gras A., Ginovart M., Moulton V., 2016. INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium. Journal of Theoretical Biology, available online 11-May-2016, Volumen: 403, pp: 45-58. doi:10.1016/j.jtbi.2016.05.017. Accepted manuscript. Download model INDISIM-Paracoccus – NetLogo’s Implementation by Araujo Granda P.A., Gras A., Ginovart M. and Moulton V. is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Araujo Granda, P.A., Gras, A., Ginovart, M., 2016. Mass degradation to reduce cytotoxic products as an individual behavior-rule embedded in a microbial model for the study of the denitrification process, in book: Microbes in the spotlight: recent progress in the understanding of beneficial and harmful microorganisms. BrownWalker Press Editors, pp: 444-448 (both included). Conference proceeding
Araujo Granda, P.A., Gras Moreu, A., Ginovart Gisbert, M., 2015. Thermodynamic Behavior-Rules for a Bacterial Individual-Based Model to Study the Denitrification Process, in: Breitenecker, F., Kugi, A., Troch, I. (Eds.), Mathematical Modelling. International Federation of Automatic Control (IFAC), Vienna University of Technology, Vienna, Austria, pp. 743–748. MathMod 2015 – Proceeding
Araujo Granda, P., Gras, A., Ginovart, M., 2014. An Individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium, in: Méndez-Vilas, A. (Ed.), Industrial, Medical and Environmental Applications of Microorganisms. Current Status and Trends. Wageningen Academic Publishers, pp. 28–33. Conference proceeding
P. Araujo Granda, A. Gras, M. Ginovart, 2013. An individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium. In Book of Abstracts – V International Conference on Environmental, Industrial and Applied Microbiology. BioMicroWorld2013, A. Mendez-Vilas (ed), Formatex p. 75. Abstract